SOCR 3D Cell Morphometry Project

http://www.socr.umich.edu/projects/3d-cell-morphometry

Publications:

  1. Alexandr A. Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, Brian D. Athey, Ivo D. Dinov
    3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results
    2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, Salt Lake City, UT, June 18-22, 2018, pp. 2272-2280. DOI:10.1109/CVPRW.2018.00304

  2. Alexandr A. Kalinin, Brian D. Athey, Ivo D. Dinov
    Evaluation of Methods for Cell Nuclear Structure Analysis from Microscopy Data
    7th International Conference on Analysis of Images, Social Networks and Texts (AIST-SUP 2018), Moscow, Russia, July 5-7, 2018. PDF

  3. Alexandr A. Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Syed S. Husain, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, Brian D. Athey, Ivo D. Dinov
    3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification
    Scientific Reports, 8. DOI:10.1038/s41598-018-31924-2

  4. Gen Zheng, Alexandr A. Kalinin, Ivo D. Dinov, Walter Meixner, Shengtao Zhu, John Wiley
    Hypothesis: Caco-2 cell rotational 3D mechanogenomic Turing patterns has clinical implications to colon crypts
    Journal of Cellular and Molecular Medicine. DOI:10.1111/jcmm.13853

Data and code:

Data: see data download page

Source code and workflow protocols: see GitHub repository